Transcript: lnc-FOXQ1-21:1

Basic information

LNCipedia transcript ID: lnc-FOXQ1-21:1 
LNCipedia gene ID: lnc-FOXQ1-21
Ensembl Gene ID: ENSG00000176515
Ensembl Transcript ID: ENST00000314040
Location (hg38): chr6:1079929-1104946
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3435 bp
Exons: 3
Sources: Broad Institute; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011147; ENST00000314040.1
Alternative gene names: XLOC_005122; linc-FOXQ1-1; ENSG00000176515.1; RP5-856G1.2; AL033381.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.1641 non-coding 
CPAT coding probability 19.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXQ1-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL033381.1-1:1
3.1 lnc-AL033381.1-1:1
4.0 lnc-AL033381.1-1:1
4.1 lnc-AL033381.1-1:1
5.0 lnc-AL033381.1-1:1
5.1 lnc-RIPK1-125:1
5.2 lnc-FOXQ1-21:1