Transcript: lnc-PDGFB-4:2

Basic information

LNCipedia transcript ID: lnc-PDGFB-4:2 
LNCipedia gene ID: lnc-PDGFB-4
Location (hg38): chr22:39312887-39314965
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1396 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT086763
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 410.3741 coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFB-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL031590.1-1:2
4.0 lnc-AL031590.1-1:2
4.1 lnc-AL031590.1-1:2
5.0 lnc-AL031590.1-1:2
5.1 lnc-DNAJB7-21:2
5.2 lnc-PDGFB-4:2