Transcript: lnc-LRRC37A3-5:7

Basic information

LNCipedia transcript ID: lnc-LRRC37A3-5:7 
LNCipedia gene ID: lnc-LRRC37A3-5
Ensembl Gene ID: ENSG00000215769
Ensembl Transcript ID: ENST00000578492
Location (hg38): chr17:64749663-64781626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2732 bp
Exons: 12
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578492.1; RP13-104F24.2-001; OTTHUMT00000445591.1; ENST00000578492.5
Alternative gene names: ENSG00000215769.4; RP13-104F24.2; OTTHUMG00000179291.1; hsa-mir-6080; ENSG00000215769.8; ARHGAP27P1-BPTFP1-KPNA2P3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 967.5543 coding 
CPAT coding probability 86.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC37A3-5:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC103810.2-1:3
4.0 lnc-AC103810.2-1:3
4.1 lnc-AC103810.2-1:3
5.0 lnc-AC103810.2-1:3
5.1 lnc-CYB561-51:7
5.2 lnc-LRRC37A3-5:7