Transcript: lnc-LRRC37A3-5:3

Basic information

LNCipedia transcript ID: lnc-LRRC37A3-5:3 
LNCipedia gene ID: lnc-LRRC37A3-5
Location (hg38): chr17:64749663-64781999
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2861 bp
Exons: 13
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000400873.3; RP13-104F24.2-201
Alternative gene names: ENSG00000215769.4; RP13-104F24.2; OTTHUMG00000179291.1; hsa-mir-6080


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 967.5543 coding 
CPAT coding probability 86.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC37A3-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC103810.2-1:1
4.0 lnc-AC103810.2-1:1
4.1 lnc-AC103810.2-1:1
5.0 lnc-AC103810.2-1:1
5.1 lnc-CYB561-51:3
5.2 lnc-LRRC37A3-5:3