Transcript: lnc-TRIM55-1:10

Basic information

LNCipedia transcript ID: lnc-TRIM55-1:10 
LNCipedia gene ID: lnc-TRIM55-1
Location (hg38): chr8:66113287-66115179
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000517961.1; AC084082.3-001; OTTHUMT00000378920.1
Alternative gene names: ENSG00000253190.1; AC084082.3; OTTHUMG00000164472.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.2165 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM55-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC084082.3.1-1:2
4.0 lnc-AC084082.3.1-1:2
4.1 lnc-AC084082.3.1-1:2
5.0 lnc-AC084082.3.1-1:2
5.1 lnc-SGK3-11:3
5.2 lnc-TRIM55-1:10