Transcript: lnc-ZNF837-1:4

Basic information

LNCipedia transcript ID: lnc-ZNF837-1:4 
LNCipedia gene ID: lnc-ZNF837-1
Ensembl Gene ID: ENSG00000232098
Ensembl Transcript ID: ENST00000597980
Location (hg38): chr19:58406559-58408484
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 570 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068395; ENST00000597980.1
Alternative gene names: ENSG00000232098.2; CTD-2619J13.14; ENSG00000232098.3; AC012313.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.0691 non-coding 
CPAT coding probability 15.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF837-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC012313.1-1:8
4.0 lnc-AC012313.1-1:8
4.1 lnc-AC012313.1-1:8
5.0 lnc-AC012313.1-1:8
5.1 lnc-ZNF772-41:4
5.2 lnc-ZNF837-1:4