Transcript: lnc-AQP12A-1:8

Basic information

LNCipedia transcript ID: lnc-AQP12A-1:8 
LNCipedia gene ID: lnc-AQP12A-1
Ensembl Gene ID: ENSG00000219159
Ensembl Transcript ID: ENST00000407635
Location (hg38): chr2:240686334-240690414
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3398 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT077847; ENST00000407635.2
Alternative gene names: ENSG00000219159.3; AC011298.2; ENSG00000219159.4; AC011298.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.9292 non-coding 
CPAT coding probability 10.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AQP12A-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC011298.2.1-1:6
4.0 lnc-AC011298.2.1-1:6
4.1 lnc-AC011298.2.1-1:6
5.0 lnc-AC011298.2.1-1:6
5.1 lnc-SNED1-13:5
5.2 lnc-AQP12A-1:8