Transcript: lnc-TNS3-3:3

Basic information

LNCipedia transcript ID: lnc-TNS3-3:3 
LNCipedia gene ID: lnc-TNS3-3
Ensembl Gene ID: ENSG00000232072
Ensembl Transcript ID: ENST00000424359
Location (hg38): chr7:46890625-46900932
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 360 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424359.1; AC004901.1-001; OTTHUMT00000340264.1; NONHSAT120506
Alternative gene names: ENSG00000232072.1; AC004901.1; OTTHUMG00000155476.2; AC004870.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.9181 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNS3-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC011294.3.1-3:2
4.0 lnc-AC011294.3.1-3:2
4.1 lnc-AC011294.3.1-3:2
5.0 lnc-AC011294.3.1-3:2
5.1 lnc-TNS3-5:2
5.2 lnc-TNS3-3:3