Transcript: lnc-EXOC4-7:4

Basic information

LNCipedia transcript ID: lnc-EXOC4-7:4 
LNCipedia gene ID: lnc-EXOC4-7
Ensembl Gene ID: ENSG00000183470
Ensembl Transcript ID: ENST00000332558
RefSeq ID: NR_046323
Location (hg38): chr7:132648794-132728769
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1998 bp
Exons: 5
Sources: Broad Institute; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00012892; NR_046323; ENST00000332558.8; NR_046323.1
Alternative gene names: XLOC_006254; linc-EXOC4-4; ENSG00000183470.9; FLJ40288; AC009365.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.6867 non-coding 
CPAT coding probability 29.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOC4-7:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009365.3.1-1:4
3.1 lnc-AC009365.3.1-1:4
4.0 lnc-AC009365.3.1-1:4
4.1 lnc-AC009365.3.1-1:4
5.0 lnc-AC009365.3.1-1:4
5.1 lnc-BPGM-18:4
5.2 lnc-EXOC4-7:4