Transcript: LINC01664:5

Basic information

LNCipedia transcript ID: LINC01664:5 
HGNC Gene Symbol: LINC01664    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1664
Ensembl Gene ID: ENSG00000235478
Ensembl Transcript ID: ENST00000441544
RefSeq ID: NR_103793
Location (hg38): chr22:17121595-17132104
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1175 bp
Exons: 4
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103793; ENST00000441544.2; NR_103793.1
Alternative gene names: ENSG00000235478.4; AC006946.15; LINC01664; LOC100996342


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.5698 non-coding 
CPAT coding probability 22.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01664:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006946.15.1-2:1
4.0 lnc-AC006946.15.1-2:1
4.1 lnc-AC006946.15.1-2:1
5.0 lnc-AC006946.15.1-2:1
5.1 LINC01664:3
5.2 LINC01664:5