Transcript: USP2-AS1:5

Basic information

LNCipedia transcript ID: USP2-AS1:5 
LNCipedia gene ID: USP2-AS1
RefSeq ID: NR_034160
Location (hg38): chr11:119381778-119499233
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1156 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_034160; NR_034160.1
Alternative gene names: THY1-AS1; USP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.4079 non-coding 
CPAT coding probability 55.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
USP2-AS1:5 no no no no

Available literature

  1. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-305N23.1.1-1:8
4.0 USP2-AS1:5
4.1 USP2-AS1:5
5.0 USP2-AS1:5
5.1 USP2-AS1:5
5.2 USP2-AS1:5