Transcript: USP2-AS1:4

Basic information

LNCipedia transcript ID: USP2-AS1:4 
HGNC Gene Symbol: USP2-AS1    
HGNC Full Gene Name: USP2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000245248
Ensembl Transcript ID: ENST00000577297
Location (hg38): chr11:119381778-119409762
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 689 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577297.1; RP11-305N23.1-004; OTTHUMT00000447242.1; NONHSAT024660; ENST00000577297.5
Alternative gene names: ENSG00000245248.3; RP11-305N23.1; OTTHUMG00000166173.3; USP2-AS1; ENSG00000245248.7; THY1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.3424 non-coding 
CPAT coding probability 36.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
USP2-AS1:4 no no no no

Available literature

  1. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-305N23.1.1-1:1
4.0 USP2-AS1:4
4.1 USP2-AS1:4
5.0 USP2-AS1:4
5.1 USP2-AS1:4
5.2 USP2-AS1:4