Transcript: TUSC7:2

Basic information

LNCipedia transcript ID: TUSC7:2 
HGNC Gene Symbol: TUSC7    
HGNC Full Gene Name: tumor suppressor candidate 7
Ensembl Gene ID: ENSG00000243197
Ensembl Transcript ID: ENST00000477539
Location (hg38): chr3:116709406-116717321
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2415 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT091313; ENST00000477539.2; ENST00000477539.6
Alternative gene names: ENSG00000243197.3; TUSC7; ENSG00000243197.7; LINC00902; LOC285194


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.5695 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC7:2 yes no no no

Available literature

  1. Xu (2017), The Novel Long Noncoding RNA TUSC7 Inhibits Proliferation by Sponging MiR-211 in Colorectal Cancer., Cell. Physiol. Biochem.
  2. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  3. Coccaro (2015), Overexpression of the LSAMP and TUSC7 genes in acute myeloid leukemia following microdeletion/duplication of chromosome 3., Cancer Genet
  4. Ge (2015), MiRNA-192 [corrected] and miRNA-204 Directly Suppress lncRNA HOTTIP and Interrupt GLS1-Mediated Glutaminolysis in Hepatocellular Carcinoma., PLoS Genet.
  5. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  6. Ma (2015), Long non-coding RNA CCAT1 promotes gallbladder cancer development via negative modulation of miRNA-218-5p., Cell Death Dis
  7. Qi (2015), Reciprocal repression between TUSC7 and miR-23b in gastric cancer., Int. J. Cancer
  8. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  9. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  10. Ding (2014), Expression of long non-coding RNA LOC285194 and its prognostic significance in human pancreatic ductal adenocarcinoma., Int J Clin Exp Pathol
  11. Tong (2014), Association of decreased expression of long non-coding RNA LOC285194 with chemoradiotherapy resistance and poor prognosis in esophageal squamous cell carcinoma., J Transl Med
  12. Xu (2014), Long non-coding RNA LSINCT5 predicts negative prognosis and exhibits oncogenic activity in gastric cancer., Medicine (Baltimore)
  13. Liu (2013), LncRNA loc285194 is a p53-regulated tumor suppressor., Nucleic Acids Res.
  14. Qi (2013), Low expression of LOC285194 is associated with poor prognosis in colorectal cancer., J Transl Med
  15. Pasic (2010), Recurrent focal copy-number changes and loss of heterozygosity implicate two noncoding RNAs and one tumor suppressor gene at chromosome 3q13.31 in osteosarcoma., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAP43-6:8
4.0 TUSC7:2
4.1 TUSC7:2
5.0 TUSC7:2
5.1 TUSC7:2
5.2 TUSC7:2