Transcript: SPATA41:7

Basic information

LNCipedia transcript ID: SPATA41:7 
HGNC Gene Symbol: SPATA41    
HGNC Full Gene Name: spermatogenesis associated 41
Ensembl Gene ID: ENSG00000189419
Ensembl Transcript ID: ENST00000560282
Location (hg38): chr15:100344478-100349655
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2072 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560282.1; RP11-168G16.1-001; OTTHUMT00000417649.1
Alternative gene names: ENSG00000189419.5; RP11-168G16.1; OTTHUMG00000172281.2; SPATA41; ENSG00000189419.6; FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.327 non-coding 
CPAT coding probability 15.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA41:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS17-1:7
4.0 SPATA41:7
4.1 SPATA41:7
5.0 SPATA41:7
5.1 SPATA41:7
5.2 SPATA41:7