Transcript: SPATA41:3

Basic information

LNCipedia transcript ID: SPATA41:3 
LNCipedia gene ID: SPATA41
Location (hg38): chr15:100344458-100350233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1563 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000340644.4; RP11-168G16.1-201
Alternative gene names: ENSG00000189419.5; RP11-168G16.1; OTTHUMG00000172281.2; SPATA41; FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.327 non-coding 
CPAT coding probability 32.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA41:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS17-1:2
4.0 SPATA41:3
4.1 SPATA41:3
5.0 SPATA41:3
5.1 SPATA41:3
5.2 SPATA41:3