Transcript: SPATA41:2

Basic information

LNCipedia transcript ID: SPATA41:2 
LNCipedia gene ID: SPATA41
RefSeq ID: NR_028140
Location (hg38): chr15:100344457-100350233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1564 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00023209; NONHSAT051092; NR_028140; NR_028140.1
Alternative gene names: XLOC_011609; linc-ADAMTS17; FLJ42289; HSD47; SPATA41


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.327 non-coding 
CPAT coding probability 32.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA41:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS17-1:2
3.1 lnc-ADAMTS17-1:3
4.0 SPATA41:2
4.1 SPATA41:2
5.0 SPATA41:2
5.1 SPATA41:2
5.2 SPATA41:2