Transcript: SNHG15:8

Basic information

LNCipedia transcript ID: SNHG15:8 
LNCipedia gene ID: SNHG15
RefSeq ID: NR_003697
Location (hg38): chr7:44983028-44986660
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 803 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_003697; NR_003697.1
Alternative gene names: FLJ38860; MYO1GUT; Linc-Myo1g; SNHG15


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.1866 non-coding 
CPAT coding probability 4.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG15:8 no no no no

Available literature

  1. Chen (2016), Upregulated expression of long noncoding RNA SNHG15 promotes cell proliferation and invasion through regulates MMP2/MMP9 in patients with GC., Tumour Biol.
  2. Tani (2015), Development of cytotoxicity-sensitive human cells using overexpression of long non-coding RNAs., J. Biosci. Bioeng.
  3. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  4. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  5. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  6. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.
  7. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNHG15-1:12
4.0 SNHG15:8
4.1 SNHG15:8
5.0 SNHG15:8
5.1 SNHG15:8
5.2 SNHG15:8