Transcript: SNHG15:10

Basic information

LNCipedia transcript ID: SNHG15:10 
HGNC Gene Symbol: SNHG15    
HGNC Full Gene Name: small nucleolar RNA host gene 15
Ensembl Gene ID: ENSG00000232956
Ensembl Transcript ID: ENST00000580458
Location (hg38): chr7:44983034-44986650
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580458.1; SNHG15-008; OTTHUMT00000447030.1; NONHSAT120419; ENST00000580458.5
Alternative gene names: ENSG00000232956.3; SNHG15; OTTHUMG00000179544.2; ENSG00000232956.4; ENSG00000232956.8; FLJ38860; MYO1GUT; Linc-Myo1g


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.1866 non-coding 
CPAT coding probability 4.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG15:10 no no no no

Available literature

  1. Chen (2016), Upregulated expression of long noncoding RNA SNHG15 promotes cell proliferation and invasion through regulates MMP2/MMP9 in patients with GC., Tumour Biol.
  2. Tani (2015), Development of cytotoxicity-sensitive human cells using overexpression of long non-coding RNAs., J. Biosci. Bioeng.
  3. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  4. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  5. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  6. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.
  7. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNHG15-1:7
4.0 SNHG15:10
4.1 SNHG15:10
5.0 SNHG15:10
5.1 SNHG15:10
5.2 SNHG15:10