Transcript: SCAMP1-AS1:1

Basic information

LNCipedia transcript ID: SCAMP1-AS1:1 
LNCipedia gene ID: SCAMP1-AS1
RefSeq ID: NR_105014
Location (hg38): chr5:78358764-78360541
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1550 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105014; NR_105014.1
Alternative gene names: ; SCAMP1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.191 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SCAMP1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3B1-2:4
4.0 SCAMP1-AS1:1
4.1 SCAMP1-AS1:1
5.0 SCAMP1-AS1:1
5.1 SCAMP1-AS1:1
5.2 SCAMP1-AS1:1