Transcript: RAMP2-AS1:24

Basic information

LNCipedia transcript ID: RAMP2-AS1:24 
LNCipedia gene ID: RAMP2-AS1
Ensembl Gene ID: ENSG00000273650
Ensembl Transcript ID: ENST00000613683
Location (hg38): chr17:42751289-42751717
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613683.1
Alternative gene names: ENSG00000273650.1; CTD-3193K9.11; ; AC100793.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -181.0232 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAMP2-AS1:24 no no no no

Available literature

  1. Liu (2016), The Potential Roles of Long Noncoding RNAs (lncRNA) in Glioblastoma Development., Mol. Cancer Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HMGN2P42-4:1
4.1 RAMP2-AS1:24
5.0 RAMP2-AS1:24
5.1 RAMP2-AS1:24
5.2 RAMP2-AS1:24