Transcript: LOH12CR2:3

Basic information

LNCipedia transcript ID: LOH12CR2:3 
HGNC Gene Symbol: LOH12CR2    
HGNC Full Gene Name: loss of heterozygosity, 12, chromosomal region 2
Ensembl Gene ID: ENSG00000205791
Ensembl Transcript ID: ENST00000381800
Location (hg38): chr12:12355406-12357067
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1540 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000381800.3
Alternative gene names: ENSG00000205791.3; LOH12CR2; LOH2CR12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.096 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LOH12CR2:3 no no no no

Available literature

  1. Montpetit (2004), Mutational and expression analysis of the chromosome 12p candidate tumor suppressor genes in pre-B acute lymphoblastic leukemia., Leukemia
  2. Montpetit (2002), A detailed transcriptional map of the chromosome 12p12 tumour suppressor locus., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LOH12CR2:3
4.1 LOH12CR2:3
5.0 LOH12CR2:3
5.1 LOH12CR2:3
5.2 LOH12CR2:3