Transcript: LOH12CR2:1

Basic information

LNCipedia transcript ID: LOH12CR2:1 
LNCipedia gene ID: LOH12CR2
Location (hg38): chr12:12355410-12357067
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1536 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00020168
Alternative gene names: XLOC_010020; linc-MANSC1; LOH2CR12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.096 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LOH12CR2:1 no no no no

Available literature

  1. Montpetit (2004), Mutational and expression analysis of the chromosome 12p candidate tumor suppressor genes in pre-B acute lymphoblastic leukemia., Leukemia
  2. Montpetit (2002), A detailed transcriptional map of the chromosome 12p12 tumour suppressor locus., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007621.1-1:1
3.1 lnc-AC007621.1-1:1
4.0 LOH12CR2:1
4.1 LOH12CR2:1
5.0 LOH12CR2:1
5.1 LOH12CR2:1
5.2 LOH12CR2:1