Transcript: LINC01600:1

Basic information

LNCipedia transcript ID: LINC01600:1 
HGNC Gene Symbol: LINC01600    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1600
Ensembl Gene ID: ENSG00000164385
Ensembl Transcript ID: ENST00000624527
RefSeq ID: NR_131168
Location (hg38): chr6:2621913-2634603
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2434 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000624527.2; NR_131168.1
Alternative gene names: ENSG00000164385.8; LINC01600; FLJ31934; bA145H9.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.2483 non-coding 
CPAT coding probability 31.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01600:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01600:1
4.1 LINC01600:1
5.0 LINC01600:1
5.1 LINC01600:1
5.2 LINC01600:1