Transcript: LINC01595:3

Basic information

LNCipedia transcript ID: LINC01595:3 
HGNC Gene Symbol: LINC01595    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1595
Ensembl Gene ID: ENSG00000259108
Ensembl Transcript ID: ENST00000556021
Location (hg38): chr19:47863616-47865341
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556021.1; CTD-3098H1.2-001; OTTHUMT00000409816.1
Alternative gene names: ENSG00000259108.1; CTD-3098H1.2; OTTHUMG00000170611.1; ENSG00000259108.2; LINC01595;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.9893 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01595:3 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SULT2A1-1:1
4.0 LINC01595:3
4.1 LINC01595:3
5.0 LINC01595:3
5.1 LINC01595:3
5.2 LINC01595:3