Transcript: LINC01587:7

Basic information

LNCipedia transcript ID: LINC01587:7 
HGNC Gene Symbol: LINC01587    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1587
Ensembl Gene ID: ENSG00000082929
Ensembl Transcript ID: ENST00000504943
Location (hg38): chr4:5527152-5527801
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT094967; ENST00000504943.1
Alternative gene names: ENSG00000082929.8; LINC01587; aC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
PRGNVPVPHR 90.9090909090909% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -195.3747 non-coding 
CPAT coding probability 20.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01587:7 no no no no

Available literature

  1. Kito (1997), Fluorescent differential display analysis of gene expression in differentiating neuroblastoma cells., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf6-1:1
4.0 LINC01587:7
4.1 LINC01587:7
5.0 LINC01587:7
5.1 LINC01587:7
5.2 LINC01587:7