Transcript: LINC01587:6

Basic information

LNCipedia transcript ID: LINC01587:6 
HGNC Gene Symbol: LINC01587    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1587
Ensembl Gene ID: ENSG00000082929
Ensembl Transcript ID: ENST00000505296
Location (hg38): chr4:5525390-5527800
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 659 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505296.1
Alternative gene names: ENSG00000082929.8; LINC01587; aC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
PRGNVPVPHR 90.9090909090909% sense-3
Lee translation initiation sites non-coding 
PhyloCSF score -166.8205 non-coding 
CPAT coding probability 20.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01587:6 no no no no

Available literature

  1. Kito (1997), Fluorescent differential display analysis of gene expression in differentiating neuroblastoma cells., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01587:6
4.1 LINC01587:6
5.0 LINC01587:6
5.1 LINC01587:6
5.2 LINC01587:6