Transcript: LINC01587:3

Basic information

LNCipedia transcript ID: LINC01587:3 
LNCipedia gene ID: LINC01587
Location (hg38): chr4:5525156-5527800
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 893 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_126517
Alternative gene names: aC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
PRGNVPVPHR 90.9090909090909% sense-3
Lee translation initiation sites non-coding 
PhyloCSF score 8.3248 non-coding 
CPAT coding probability 11.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01587:3 no no no no

Available literature

  1. Kito (1997), Fluorescent differential display analysis of gene expression in differentiating neuroblastoma cells., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf6-1:3
4.0 LINC01587:3
4.1 LINC01587:3
5.0 LINC01587:3
5.1 LINC01587:3
5.2 LINC01587:3