Transcript: LINC01580:3

Basic information

LNCipedia transcript ID: LINC01580:3 
HGNC Gene Symbol: LINC01580    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1580
Ensembl Gene ID: ENSG00000258785
Ensembl Transcript ID: ENST00000555364
Location (hg38): chr15:93900701-93973822
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 661 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555364; ENST00000555364.1; CTD-2643K12.2-002; OTTHUMT00000415194.1; ENST00000555364.5
Alternative gene names: ENSG00000258785; CTD-2643K12.2; ENSG00000258785.1; OTTHUMG00000171810.1; ENSG00000258785.5; LINC01580;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0189 non-coding 
CPAT coding probability 10.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01580:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MCTP2-2:2
3.1 lnc-MCTP2-4:2
4.0 LINC01580:3
4.1 LINC01580:3
5.0 LINC01580:3
5.1 LINC01580:3
5.2 LINC01580:3