Transcript: LINC01554:6

Basic information

LNCipedia transcript ID: LINC01554:6 
LNCipedia gene ID: LINC01554
Ensembl Gene ID: ENSG00000250362
Ensembl Transcript ID: ENST00000503091
Location (hg38): chr5:95861786-95874519
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503091.1; AC008592.5-001; OTTHUMT00000370274.1; NONHSAT102872
Alternative gene names: ENSG00000250362.1; AC008592.5; OTTHUMG00000162740.1; FLJ38821; FIS; AC008592.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.6219 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01554:6 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf27-2:1
4.0 LINC01554:6
4.1 LINC01554:6
5.0 LINC01554:6
5.1 LINC01554:6
5.2 LINC01554:6