Transcript: LINC01554:5

Basic information

LNCipedia transcript ID: LINC01554:5 
LNCipedia gene ID: LINC01554
Location (hg38): chr5:95858804-95863030
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2018 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT102871
Alternative gene names: FLJ38821; FIS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.2086 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01554:5 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf27-2:4
4.0 LINC01554:5
4.1 LINC01554:5
5.0 LINC01554:5
5.1 LINC01554:5
5.2 LINC01554:5