Transcript: LINC01554:4

Basic information

LNCipedia transcript ID: LINC01554:4 
HGNC Gene Symbol: LINC01554    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1554
Ensembl Gene ID: ENSG00000236882
Ensembl Transcript ID: ENST00000620167
Location (hg38): chr5:95856869-95860133
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1443 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620167.1
Alternative gene names: ENSG00000236882.7; LINC01554; FLJ38821; FIS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -97.6955 non-coding 
CPAT coding probability 22.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01554:4 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01554:4
4.1 LINC01554:4
5.0 LINC01554:4
5.1 LINC01554:4
5.2 LINC01554:4