Transcript: LINC01550:11

Basic information

LNCipedia transcript ID: LINC01550:11 
HGNC Gene Symbol: LINC01550    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1550
Ensembl Gene ID: ENSG00000246223
Ensembl Transcript ID: ENST00000502187
Location (hg38): chr14:97957930-97978110
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2455 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502187; ENST00000502187.5
Alternative gene names: ENSG00000246223; ENSG00000246223.8; LINC01550;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1158 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01550:11 no no no no

Available literature

  1. Yu (2015), Glucocorticoids Significantly Influence the Transcriptome of Bone Microvascular Endothelial Cells of Human Femoral Head., Chin. Med. J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-204N11.1.1-2:9
3.1 lnc-RP11-204N11.1.1-3:9
4.0 LINC01550:11
4.1 LINC01550:11
5.0 LINC01550:11
5.1 LINC01550:11
5.2 LINC01550:11