Transcript: LINC01549:3

Basic information

LNCipedia transcript ID: LINC01549:3 
HGNC Gene Symbol: LINC01549    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1549
Ensembl Gene ID: ENSG00000232560
Ensembl Transcript ID: ENST00000440664
Location (hg38): chr21:17438890-17449185
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 714 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440664.5
Alternative gene names: ENSG00000232560.6; LINC01549;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -69.6794 non-coding 
CPAT coding probability 7.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01549:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01549:3
4.1 LINC01549:3
5.0 LINC01549:3
5.1 LINC01549:3
5.2 LINC01549:3