Transcript: LINC01546:1

Basic information

LNCipedia transcript ID: LINC01546:1 
HGNC Gene Symbol: LINC01546    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1546
Ensembl Gene ID: ENSG00000228459
Ensembl Transcript ID: ENST00000457435
RefSeq ID: NR_038428
Location (hg38): chrX:3271820-3284653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038428; ENST00000457435.1; NR_038428.1
Alternative gene names: ENSG00000228459.3; LINC01546;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.2696 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01546:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXorf28-4:1
4.0 LINC01546:1
4.1 LINC01546:1
5.0 LINC01546:1
5.1 LINC01546:1
5.2 LINC01546:1