Transcript: LINC01268:5

Basic information

LNCipedia transcript ID: LINC01268:5 
LNCipedia gene ID: LINC01268
Location (hg38): chr6:113869997-113870734
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000434296; TCONS_00011545; ENST00000434296.1; RP1-249H1.4-001; OTTHUMT00000041902.1; NONHSAT147427
Alternative gene names: ENSG00000227502; XLOC_005811; linc-LAMA4-3; RP1-249H1.4; ENSG00000227502.1; OTTHUMG00000015405.1; LOC285758


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.0123 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01268:5 no no no no

Available literature

  1. Matjasic (2017), Expression of LOC285758, a Potential Long Non-coding Biomarker, is Methylation-dependent and Correlates with Glioma Malignancy Grade., Radiol Oncol
  2. Punzi (2014), Increased expression of MARCKS in post-mortem brain of violent suicide completers is related to transcription of a long, noncoding, antisense RNA., Mol. Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC2-1:3
3.1 lnc-HDAC2-1:3
4.0 LINC01268:5
4.1 LINC01268:5
5.0 LINC01268:5
5.1 LINC01268:5
5.2 LINC01268:5