Transcript: LINC01208:5

Basic information

LNCipedia transcript ID: LINC01208:5 
HGNC Gene Symbol: LINC01208    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1208
Ensembl Gene ID: ENSG00000223715
Ensembl Transcript ID: ENST00000421034
Location (hg38): chr3:176626279-176634457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 326 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005887; ENST00000421034; ENST00000421034.1; RP11-71G7.1-002; OTTHUMT00000347988.1; NONHSAT093322
Alternative gene names: XLOC_003331; linc-SPATA16-1; ENSG00000223715; RP11-71G7.1; ENSG00000223715.1; OTTHUMG00000157218.2; LINC01208;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -443.8902 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01208:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBL1XR1-4:3
3.1 lnc-TBL1XR1-4:3
4.0 LINC01208:5
4.1 LINC01208:5
5.0 LINC01208:5
5.1 LINC01208:5
5.2 LINC01208:5