Transcript: LINC01204:2

Basic information

LNCipedia transcript ID: LINC01204:2 
LNCipedia gene ID: LINC01204
RefSeq ID: NR_104644
Location (hg38): chrX:45505388-45527239
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2924 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00016932; NONHSAT136793; NR_104644; NR_104644.1
Alternative gene names: XLOC_007966; linc-ZNF673-4; ; LINC01204


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4296 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01204:2 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM6A-1:2
3.1 lnc-KDM6A-2:2
4.0 LINC01204:2
4.1 LINC01204:2
5.0 LINC01204:2
5.1 LINC01204:2
5.2 LINC01204:2