Transcript: LINC01164:1

Basic information

LNCipedia transcript ID: LINC01164:1 
HGNC Gene Symbol: LINC01164    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1164
Ensembl Gene ID: ENSG00000189275
Ensembl Transcript ID: ENST00000341866
RefSeq ID: NR_038365
Location (hg38): chr10:131772398-131790199
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3384 bp
Exons: 5
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038365; ENST00000341866.3; NR_038365.1
Alternative gene names: ENSG00000189275.3; LINC01164;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8391 non-coding 
CPAT coding probability 62.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01164:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL450307.1-3:1
4.0 LINC01164:1
4.1 LINC01164:1
5.0 LINC01164:1
5.1 LINC01164:1
5.2 LINC01164:1