Transcript: LINC01134:3

Basic information

LNCipedia transcript ID: LINC01134:3 
HGNC Gene Symbol: LINC01134    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1134
Ensembl Gene ID: ENSG00000236423
Ensembl Transcript ID: ENST00000442673
Location (hg38): chr1:3900404-3917225
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3059 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442673; ENST00000442673.1; RP13-15E13.1-003; OTTHUMT00000158500.1; NONHSAT000556
Alternative gene names: ENSG00000236423; RP13-15E13.1; ENSG00000236423.1; OTTHUMG00000041129.2; LINC01134; ENSG00000236423.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.3495 non-coding 
CPAT coding probability 27.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01134:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DFFB-1:2
3.1 lnc-DFFB-1:2
4.0 LINC01134:3
4.1 LINC01134:3
5.0 LINC01134:3
5.1 LINC01134:3
5.2 LINC01134:3