Transcript: LINC01058:2

Basic information

LNCipedia transcript ID: LINC01058:2 
HGNC Gene Symbol: LINC01058    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1058
Ensembl Gene ID: ENSG00000225039
Ensembl Transcript ID: ENST00000420694
Location (hg38): chr13:30419519-30422237
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 448 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021627; ENST00000420694; ENST00000420694.1; RP11-223E19.2-001; OTTHUMT00000125971.1; NONHSAT032799
Alternative gene names: XLOC_010557; linc-KATNAL1-2; ENSG00000225039; RP11-223E19.2; ENSG00000225039.1; OTTHUMG00000055981.1; LINC01058;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.6309 non-coding 
CPAT coding probability 6.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01058:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMGB1-1:1
3.1 lnc-HMGB1-1:1
4.0 LINC01058:2
4.1 LINC01058:2
5.0 LINC01058:2
5.1 LINC01058:2
5.2 LINC01058:2