Transcript: LINC01054:1

Basic information

LNCipedia transcript ID: LINC01054:1 
HGNC Gene Symbol: LINC01054    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1054
Ensembl Gene ID: ENSG00000229723
Ensembl Transcript ID: ENST00000446989
Location (hg38): chr13:114329559-114333948
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 514 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021703; ENST00000446989.1; AL845154.2-001; OTTHUMT00000045980.1; NONHSAT035429
Alternative gene names: XLOC_010746; linc-RASA3-3; ENSG00000229723.1; AL845154.2; OTTHUMG00000017405.1; LINC01054;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.5157 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01054:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASA3-1:1
3.1 lnc-RASA3-1:1
4.0 LINC01054:1
4.1 LINC01054:1
5.0 LINC01054:1
5.1 LINC01054:1
5.2 LINC01054:1