Transcript: LINC01043:1

Basic information

LNCipedia transcript ID: LINC01043:1 
HGNC Gene Symbol: LINC01043    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1043
Ensembl Gene ID: ENSG00000260343
Ensembl Transcript ID: ENST00000565936
Location (hg38): chr13:112313467-112321758
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6897 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514686; TCONS_00021603; ENST00000565936.1; RP11-315H15.3-001; OTTHUMT00000431485.1; NONHSAT035274
Alternative gene names: ENSG00000250108; XLOC_010507; linc-C13orf28-1; ENSG00000260343.1; RP11-315H15.3; OTTHUMG00000176083.1; LINC01043;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.7007 non-coding 
CPAT coding probability 8.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01043:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPACA7-1:1
3.1 lnc-SPACA7-1:1
4.0 LINC01043:1
4.1 LINC01043:1
5.0 LINC01043:1
5.1 LINC01043:1
5.2 LINC01043:1