Transcript: LINC00887:6

Basic information

LNCipedia transcript ID: LINC00887:6 
LNCipedia gene ID: LINC00887
Location (hg38): chr3:194301206-194312789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 841 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006755; NONHSAT094081
Alternative gene names: XLOC_003385; linc-ATP13A4-8; HEIRCC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.6284 non-coding 
CPAT coding probability 10.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00887:6 no no no no

Available literature

  1. Xiong (2017), High expression of the long non-coding RNA HEIRCC promotes Renal Cell Carcinoma metastasis by inducing epithelial-mesenchymal transition., Oncotarget
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics
  3. Lin (2015), The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury., Am. J. Physiol. Renal Physiol.
  4. Yu (2012), LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPN2-1:5
3.1 lnc-CPN2-1:5
4.0 LINC00887:6
4.1 LINC00887:6
5.0 LINC00887:6
5.1 LINC00887:6
5.2 LINC00887:6