Transcript: LINC00885:3

Basic information

LNCipedia transcript ID: LINC00885:3 
LNCipedia gene ID: LINC00885
Location (hg38): chr3:196142755-196160025
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 982 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005444; NONHSAT094298
Alternative gene names: XLOC_003002; linc-OSTalpha-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.7488 non-coding 
CPAT coding probability 24.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00885:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC069257.9.1-1:2
3.1 lnc-AC069257.9.1-2:2
4.0 LINC00885:3
4.1 LINC00885:3
5.0 LINC00885:3
5.1 LINC00885:3
5.2 LINC00885:3