Transcript: LINC00862:3

Basic information

LNCipedia transcript ID: LINC00862:3 
HGNC Gene Symbol: LINC00862    
HGNC Full Gene Name: long intergenic non-protein coding RNA 862
Ensembl Gene ID: ENSG00000203721
Ensembl Transcript ID: ENST00000367355
RefSeq ID: NR_040064
Location (hg38): chr1:200342544-200373792
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1417 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040064; ENST00000367355.1; ENST00000367355.5; NR_040064.1
Alternative gene names: ENSG00000203721.1; LINC00862; ENSG00000203721.5; ; ENSG00000203721.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5732 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00862:3 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf98-1:3
4.0 LINC00862:3
4.1 LINC00862:3
5.0 LINC00862:3
5.1 LINC00862:3
5.2 LINC00862:3