Transcript: LINC00686:1

Basic information

LNCipedia transcript ID: LINC00686:1 
HGNC Gene Symbol: LINC00686    
HGNC Full Gene Name: long intergenic non-protein coding RNA 686
Ensembl Gene ID: ENSG00000237687
Ensembl Transcript ID: ENST00000435412
Location (hg38): chr20:62695024-62700480
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435412.1; C20orf90-001; OTTHUMT00000080056.1; NONHSAT080776
Alternative gene names: ENSG00000237687.2; C20orf90; OTTHUMG00000032927.1; LINC00686; bA93B14.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 80.644 coding 
CPAT coding probability 21.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00686:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-93B14.6.1-3:1
4.0 LINC00686:1
4.1 LINC00686:1
5.0 LINC00686:1
5.1 LINC00686:1
5.2 LINC00686:1