Transcript: LINC00652:5

Basic information

LNCipedia transcript ID: LINC00652:5 
LNCipedia gene ID: LINC00652
Location (hg38): chr20:18787651-18793993
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1713 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000412553; ENST00000412553.1; RP5-1068E13.3-003; OTTHUMT00000078198.1; NONHSAT078845
Alternative gene names: ENSG00000179935; RP5-1068E13.3; ENSG00000179935.5; OTTHUMG00000031986.3; LINC00652; HSPC072


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.7365 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00652:5 no no no no

Available literature

  1. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf78-1:5
3.1 lnc-C20orf78-1:5
4.0 LINC00652:5
4.1 LINC00652:5
5.0 LINC00652:5
5.1 LINC00652:5
5.2 LINC00652:5