Transcript: LINC00652:2

Basic information

LNCipedia transcript ID: LINC00652:2 
LNCipedia gene ID: LINC00652
Location (hg38): chr20:18787971-18794584
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1951 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027881; NONHSAT078847
Alternative gene names: XLOC_013669; linc-RBBP9-5; HSPC072


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.7365 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00652:2 no no no no

Available literature

  1. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf78-1:2
3.1 lnc-C20orf78-1:2
4.0 LINC00652:2
4.1 LINC00652:2
5.0 LINC00652:2
5.1 LINC00652:2
5.2 LINC00652:2