Transcript: LINC00636:2

Basic information

LNCipedia transcript ID: LINC00636:2 
HGNC Gene Symbol: LINC00636    
HGNC Full Gene Name: long intergenic non-protein coding RNA 636
Ensembl Gene ID: ENSG00000240423
Ensembl Transcript ID: ENST00000494231
Location (hg38): chr3:107883248-107928907
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1264 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000494231.1
Alternative gene names: ENSG00000240423.1; LINC00636;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.9073 non-coding 
CPAT coding probability 31.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00636:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-631B21.2.1-1:2
4.0 LINC00636:2
4.1 LINC00636:2
5.0 LINC00636:2
5.1 LINC00636:2
5.2 LINC00636:2