Transcript: LINC00629:2

Basic information

LNCipedia transcript ID: LINC00629:2 
LNCipedia gene ID: LINC00629
Location (hg38): chrX:134549904-134560363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1137 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017247; NONHSAT138634
Alternative gene names: XLOC_008068; linc-FAM122C-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.7592 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00629:2 no no no no

Available literature

  1. Muys (2016), Placenta-Enriched LincRNAs MIR503HG and LINC00629 Decrease Migration and Invasion Potential of JEG-3 Cell Line., PLoS ONE
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPRT1-1:2
3.1 lnc-HPRT1-1:2
4.0 LINC00629:2
4.1 LINC00629:2
5.0 LINC00629:2
5.1 LINC00629:2
5.2 LINC00629:2